Ok, so nearside battery charged with the ctek and measures 13.9v when reinstalled.
New battery earth and bridging cables installed as mentioned earlier.
There were 6 wires directly fed off the near side battery. These were stereo, aeriel amp, reverse camera, one for rear tow bar electrics (not fused) and two going to a relay to do with the front wipers.
The idea is to remove all of these so nothing can drain the left battery.
Having said that, i have installed a pair of volt meters so i can see whats going on. The left meter is the left battery, the right is the combined circuit at the right hand battery +Ve terminal.

With the new voltage regulator fitted the alternator output seems steady at 27.6v regardless of revs.
Will report any relevant observations of the meter values in use.
I just need to decide how to rewire the wiper wires, otherwise, everything else is being connected to a dropper from the 24v taken from the cigar lighter.
Once this is completed I will post pics of the electrics all tidied up - currently a mess of wires in the passenger footwell.
Still have a spare pair of batteries in the boot in case problems return but progress is being made and confidence is returning.